Package index • reefspawn

All functions

beta_dist(): Sample Beta Distribution and Return Density

calculate_allee_effects(): Calculate Within-Species Pairwise Colony Distances with Status Label

calculate_egg_densities(): Calculate volumetric density of spheres with percent surface cover

calculate_intraspecific_allee_dist(): Calculate Intraspecific Pairwise Colony Distances as sf LINESTRINGs

coralsim(): Simulate Coral Colonies in a Polygon

map_populations(): Map Coral Populations with Species Coloring

polyp_density_data: Load and augment coral polyp density data

posterior_coral_predict(): Generate Posterior Predictions of Coral Colony Area

predict_colony_width(): Predict colony width using posterior predict (lognormal model)

predict_oocytes(): Predict oocytes per reproductive polyp using posterior predict (ZIP model)

predict_polyp_density(): Predict polyp density per colony using posterior predict (gaussian model)

predict_repro_prob(): Predict reproductive probability using posterior predict (bernoulli model)

sample_sterile_zone(): Sample Sterile Zone Proportions by Species

setplot(): Generate a Rectangular sf Plot Grid

simulate_bleaching(): Assign Bleaching Status to Coral Population

simulate_community(): Simulate Coral Community Composition

simulate_coralsize(): Simulate Coral Colony Sizes Using Skewed Distributions

simulate_populations(): Simulate Coral Population Layout from Posterior Predictions

simulate_spawning(): Simulate Spawning Output per Coral Colony

sp_order: Load and preprocess coral fecundity and size data

sp_pal(): Generate Species Color Palette