
Package index
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create_climatology() - Create NOAA-style SST climatology and heat-stress products
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calculate_monthly_mean() - Create the NOAA CRW monthly mean SST climatology
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calculate_maximum_monthly_mean() - Create Maximum Monthly Mean (MMM)
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calculate_daily_climatology() - Calculate the NOAA CRW daily SST climatology
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calculate_anomalies() - Calculate daily SST anomalies
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calculate_hotspots() - Calculate NOAA Coral Bleaching HotSpots
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calculate_dhw() - Calculate Degree Heating Weeks (DHW)
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calculate_baa() - Calculate the NOAA single-day Bleaching Alert Area category
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calculate_baa_7d() - Calculate NOAA's 7-day maximum Bleaching Alert Area composite
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encode_noaa() - Encode a raster using NOAA Coral Reef Watch product precision
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as_climatology_df() - Flatten climatology outputs (list of SpatRaster) to a tidy data.frame
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calculate_dhmi() - Legacy rolling monthly heat-stress calculation
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calculate_dhm() - Calculate rolling Degree Heating Months
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calculate_dhmi_lough() - Calculate the Lough et al. Degree Heating Month Index
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calculate_metrics() - Calculate explicitly defined SST variability metrics
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hindcast() - Hindcast Bias-Corrected Raster Time Series via Monthly Anomaly Quantile Mapping (QM/QDM)
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download_CoralTemp() - Download CoralTemp data
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download_OISST() - Download OISST data
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download_gbr_spatial() - Download GBR spatial data
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download_ERA5() - Download ERA5 data
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process_ERA5() - Process ERA5 NetCDF Files
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process_CoralTemp() - Process CoralTemp NetCDF files into a combined raster
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process_OISST() - Download GBR spatial data
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process_year() - Process NetCDF rasters for a given year
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plot_annual_dhw() - Plot mean monthly maximum for a given gridcell
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plot_max_dhw() - Plot annual maximum DHW time series
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plot_mm() - Plot mean monthly maximum for a given gridcell
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plot_sst_timeseries() - Plot seasonal SST vs. MMM with bleaching status
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plot2() - Simple XY plot for terra::rast values() comparisons
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plot_sst_year() - Plot seasonal SST vs. MMM with bleaching status
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NOAA_CRW_data - NOAA_CRW_data
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summarise_raster() - Summarise rasters to year
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st_polygon_from_bbox() - Create sf polygon from bbox
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extract_reefs() - Extract reef
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isComplete() - Check completeness of dated NetCDF files by filename
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check_missing_dates() - Check missing dates