Package index • dhw

Climatologies and SST Metrics

create_climatology(): Create climatology

calculate_monthly_mean(): Create Monthly Mean (MMM)

calculate_maximum_monthly_mean(): Create Maximum Monthly Mean (MMM)

calculate_daily_climatology(): Calculate Daily Climatology

calculate_anomalies(): Calculate anomalies

calculate_hotspots(): Calculate hotspots

calculate_dhw(): Calculate DHW

calculate_baa(): Calculate BAA

calculate_dhmi(): Calculate Degree Heating Month Index (DHMi)

Download data

download_CoralTemp(): Download CoralTemp data

download_OISST(): Download OISST data

download_gbr_spatial(): Download GBR spatial data

download_ERA5(): Download ERA5 data

process_ERA5(): Process ERA5 NetCDF Files

process_CoralTemp(): Process CoralTemp NetCDF files into a combined raster

process_OISST(): Download GBR spatial data

Visualise data

plot_annual_dhw(): Plot mean monthly maximum for a given gridcell

plot_max_dhw(): Plot annual maximum DHW time series

plot_mm(): Plot mean monthly maximum for a given gridcell

plot_sst_timeseries(): Plot seasonal SST vs. MMM with bleaching status

plot2(): Simple XY plot for terra::rast values() comparisons

Source data

NOAA_CRW_data: NOAA_CRW_data

Assist functions

summarise_raster(): Summarise rasters to year

st_polygon_from_bbox(): Create sf polygon from bbox

extract_reefs(): Extract reef

as_climatology_df(): Flatten climatology outputs (list of SpatRaster) to a tidy data.frame

isComplete(): Check completeness of dated NetCDF files by filename

check_missing_dates(): Check missing dates

process_year(): Process NetCDF rasters for a given year

calculate_metrics(): Calculate SST Variability Metrics