Package index • coralseed

Particle simulation

simulate_particles(): Simulate Lagrangian particle trajectories from gridded flow fields
seed_particles(): Seed particles
particles_to_tracks(): Particles to tracks

Settlement and seascapes

seascape_probability(): Seascape Probability
settle_particles(): Settle Particles
simulate_mortality(): Simulate Mortality

Visualisation and summaries

ggplot_silent(): Silence ggplot warnings
plot_draws(): plot draws
plot_draws_median(): plot draws
plot_particles(): Plot output from settle_particles
plot_recom(): plot_recom: Visualize Ocean Currents and Wind from NetCDF Data
plot_settlers(): Plot output from settle_particles
set_restoration_plot(): Set restoration plot
benthic_map: benthic_map
seascapecolors() extract_parallel() map_coralseed(): Color palettes
lizard_osm_map: Lizard Island OSM basemap
reef_map: reef_map
settler_heatmap(): Generate a Heatmap of Settler Particles
stationary_particles_map(): Map stationary particles
settlement_summary(): Summarise settlement results
settlement_density(): Settlement density

Data

lizard_osm_map: Lizard Island OSM basemap

All functions

animate_coralseed(): Animate Coral Seed Particle Tracks
benthic_map: benthic_map
benthic_probability: benthic_probability
calculate_dispersion(): Calculate dispersion
drop_stick(): Drop stuck particles
extract_ocean_parcels(): extract_ocean_particles
seascapecolors() extract_parallel() map_coralseed(): Color palettes
flowchart_coralseed(): Flowchart of Coral Larval Fates
ggplot_silent(): Silence ggplot warnings
import_zarr(): Seed particles
infamis_tiles_exp: A fitted brms model for tile-level settlement
infamis_tiles_log: Infamis tiles (lognormal model)
infamis_tiles_weibull: Infamis tiles (Weibull model)
lizard_osm_map: Lizard Island OSM basemap
metadata: metadata
parameter_draws_exp: parameter_draws_exp
parameter_draws_log: parameter_draws_log
parameter_draws_weibull: parameter_draws_weibull
particle_distances(): Particle distances
particles_to_tracks(): Particles to tracks
particles_to_tracks_linestring(): Particles to tracks
particles_to_tracks_time(): Particles to tracks v3.0
plot_draws(): plot draws
plot_draws_median(): plot draws
plot_particles(): Plot output from settle_particles
plot_recom(): plot_recom: Visualize Ocean Currents and Wind from NetCDF Data
plot_settlers(): Plot output from settle_particles
predict_competency(): Predict competency
process_year(): Process NetCDF rasters for a given year
reef_map: reef_map
render_vignettes(): Render package Quarto vignettes one by one
return_draws(): return draws
save2(): Safely Save R Objects Without Overwriting the File
seascape_color_pal(): Seascape color palette
seascape_probability(): Seascape Probability
seasims_tiles_exp: Seasims tiles (exponential model)
seasims_tiles_log: Seasims tiles (lognormal model)
seasims_tiles_weibull: Seasims tiles (Weibull model)
seed_particles(): Seed particles
seed_particles_dt(): Seed particles
set_buffer(): Set buffer
set_restoration_plot(): Set restoration plot
settle_particles(): Settle Particles
settlement_density(): Settlement density
settlement_statistics(): Settlement statistics
settlement_summary(): Summarise settlement results
settler_heatmap(): Generate a Heatmap of Settler Particles
sf_to_xyzm(): Build LINESTRING XYZM trips (integer M from a time column)
simulate_flowfields(): Simulate interpolated flow fields from tiltmeter velocity data
simulate_mortality(): Simulate Mortality
simulate_particles(): Simulate Lagrangian particle trajectories from gridded flow fields
st_set_point(): st_set_point
stationary_particles(): Stationary particles
stationary_particles_map(): Map stationary particles