Flowchart of Coral Larval Fates — flowchart

Generate an interactive Sankey diagram showing the fate of coral larvae through dispersal, settlement, and mortality.

Usage

flowchart_coralseed(
  seed_particles_input,
  settle_particles_input,
  save_output = NULL,
  multiplier = 1,
  postsettlement = 0.8,
  width = 10,
  height = 6
)

Arguments

seed_particles_input: An sf object or tibble containing all released larval trajectories with at least id, dispersaltime, and state.
settle_particles_input: A named list containing $points, an sf object with settled larvae and id.
save_output: optional file path to save output as png, jpg, or pdf
multiplier: Numeric multiplier to scale particle counts (e.g., if each simulated particle represents multiple larvae).
postsettlement: Postsettlement mortality in proportion (e.g. 80% = 0.8)
width: output width in inches (default 10)
height: output height in inches (default 6)

Value

An interactive Sankey diagram (htmlwidget).

Examples

if (FALSE) { # \dontrun{
flowchart_coralseed(moore_particles, moore_settlers, multiplier = 1, postsettlement = 0.8)
} # }